BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012B04SP1|AL426316
(544 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1118 809 0.0
>3x_Contig1118
Length = 5540
Score = 809 bits (397), Expect = 0.0
Identities = 499/546 (91%), Gaps = 2/546 (0%)
Strand = Plus / Minus
Query: 1 acttgawagcggaaacaacagtcgacaatcaagtgctccagtattgacaaatgatgggga 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 acttgaaagcggaaacaacagtcgacaatcaagtgctccagtattgacaaatgatgggga 872
Query: 61 atccgattctgatctttycgatttagatgaggctcgtacagctaaaatatcaagcagtgc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 atccgattctgatctttccgatttagatgaggctcgtacagctaaaatatcaagcagtgc 812
Query: 121 gattcacgaagattcctctccggtgaaacattatwatgawcacaagcgcaaatyctctag 180
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 811 gattcacgaagattcctctccggtgaaacattataatgaacacaagcgcaaatcctctag 752
Query: 181 tatagardactcctccaatcacaagnggcnnnatcattctgccggggaatwgataccgaw 240
|||||| ||||||||||||||||| || | |||||||||||| || ||||||||
Sbjct: 751 tatagaaaactcctccaatcacaagaagcaaaaacattctgccgggaaaaagataccgaa 692
Query: 241 gactaagcgtggagtacatagggttgcyggagggnacaaawctacaaattgcttgtgata 300
||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||| |||
Sbjct: 691 gactaagcgtggagtacatagggatgccggagggaacaaaactacaaattgcttgtaata 632
Query: 301 aaggcaaatwtgatttggcaaaakwwcttattgatgatgacggctatgacgttwacgacc 360
||||||||| ||||||||||||| |||||||| || ||||||||||||||| ||||||
Sbjct: 631 aaggcaaatatgatttggcaaaaaaacttattgaagaagacggctatgacgttaacgacc 572
Query: 361 aagacaacgctggawatwcgccactacacgatgcagctcttawtg-gtcattcagctatt 419
|||||||||||||| || ||||||||||||| |||||||| | || |||||||||| |||
Sbjct: 571 aagacaacgctggaaatacgccactacacgaagcagctctaaatgcgtcattcagcaatt 512
Query: 420 gtcgagttgctcgttagatatggagctaatgttaatwttcwatcatatgatatgtttcta 479
|||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 511 gtcgagttgctcgtaagacatggagctaatgttaatattcaatcatatgatatgtttcta 452
Query: 480 gatacgcctcttattgatgcttccgc-gaatggccayataaatgttgtaaaatatcttct 538
|||||||||||||||||||||||||| ||| |||| |||||| || ||||| |||||||
Sbjct: 451 gatacgcctcttattgatgcttccgcacaatcgccacataaatcttctaaaacatcttct 392
Query: 539 agatca 544
||||||
Sbjct: 391 agatca 386
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.34
Gapped
Lambda K H
1.41 0.716 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1897
Number of Sequences: 1807
Number of extensions: 1897
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 544
length of database: 10,358,551
effective HSP length: 16
effective length of query: 528
effective length of database: 10,329,639
effective search space: 5454049392
effective search space used: 5454049392
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.5 bits)
S1: 12 (24.9 bits)
S2: 49 (100.3 bits)